Python Module Index

a | b | c | d | e | f | g | h | i | k | l | m | o | p | r | s | t | u | v | w | z


	a
	`sequana.annotation`
	`sequana.assembly`

	b
	`sequana.bamtools`
	`sequana.bed`
	`sequana.bedtools`
	`sequana.biomol`
	`sequana.blast`

	c
	`sequana.canu_scanner`
	`sequana.checkm`
	`sequana.cigar`
	`sequana.cnv`
	`sequana.codon`
	`sequana.compare`
	`sequana.contigs`
	`sequana.coverage`
	`sequana.cpg_islands`
	`sequana.criteria`
	`sequana.cruciforms`

	d
	`sequana.datatools`
	`sequana.demultiplex`

	e
	`sequana.enrichment`
	`sequana.enrichment.gsea`
	`sequana.enrichment.kegg`
	`sequana.enrichment.mart`
	`sequana.enrichment.ontology`
	`sequana.enrichment.panther`
	`sequana.enrichment.plot_go_terms`
	`sequana.enrichment.quickgo`
	`sequana.enrichment.uniprot_enrichment`

	f
	`sequana.fasta`
	`sequana.fasta_gff_correction`
	`sequana.fastq`
	`sequana.fastq_splitter`
	`sequana.fastqc`
	`sequana.featurecounts`
	`sequana.find_motif`
	`sequana.freebayes_vcf_filter`
	`sequana.frip`

	g
	`sequana.G4hunter`
	`sequana.genbank`
	`sequana.gfa`
	`sequana.gff3`
	`sequana.gtf_fixer`

	h
	`sequana.hmmtools`
	`sequana.homer`

	i
	`sequana.idr`
	`sequana.iem`
	`sequana.imotif`
	`sequana.isoseq`
	`sequana.itol`

	k
	`sequana.kegg`
	`sequana.kmer`
	`sequana.kozak`
	`sequana.kraken`
	`sequana.kraken.analysis`
	`sequana.kraken.consensus`
	`sequana.kraken.downloads`
	`sequana.kraken.multikraken`
	`sequana.kraken.sequential`
	`sequana.krona`

	l
	`sequana.laa`

	m
	`sequana.macs3`
	`sequana.metrics`
	`sequana.mgi`
	`sequana.mh`
	`sequana.misc`
	`sequana.mixture`
	`sequana.modules_report`
	`sequana.modules_report.bamqc`
	`sequana.modules_report.base_module`
	`sequana.modules_report.bwa_bam_to_fastq`
	`sequana.modules_report.coverage`
	`sequana.modules_report.cutadapt`
	`sequana.modules_report.fastq_stats`
	`sequana.modules_report.fastqc`
	`sequana.modules_report.joint_calling`
	`sequana.modules_report.kegg_enrichment`
	`sequana.modules_report.kraken`
	`sequana.modules_report.multi_summary`
	`sequana.modules_report.pacbio_input_bam`
	`sequana.modules_report.panther_enrichment`
	`sequana.modules_report.phix`
	`sequana.modules_report.quast`
	`sequana.modules_report.rnadiff`
	`sequana.modules_report.summary`
	`sequana.modules_report.trf`
	`sequana.modules_report.uniprot_enrichment`
	`sequana.modules_report.variant_calling`
	`sequana.mpileup`

	o
	`sequana.orthofinder`

	p
	`sequana.pacbio`
	`sequana.pacbio_amplicon`
	`sequana.palindromes`
	`sequana.phantom`
	`sequana.phred`
	`sequana.plots`
	`sequana.plots.canvasjs_base`
	`sequana.plots.canvasjs_linegraph`
	`sequana.protein`

	r
	`sequana.resources`
	`sequana.resources.data`
	`sequana.restriction`
	`sequana.ribodesigner`
	`sequana.rnadiff`
	`sequana.rnafold`
	`sequana.running_median`

	s
	`sequana.salmon`
	`sequana.sequence`
	`sequana.sniffer`
	`sequana.snpeff`
	`sequana.somy`
	`sequana.stats`
	`sequana.summary`

	t
	`sequana.taxonomy`
	`sequana.telomere`
	`sequana.tools`
	`sequana.trf`

	u
	`sequana.utils`
	`sequana.utils.checker`
	`sequana.utils.config`
	`sequana.utils.datatables_js`
	`sequana.utils.df2html`
	`sequana.utils.fisher`
	`sequana.utils.pandas`
	`sequana.utils.singleton`
	`sequana.utils.tree`

	v
	`sequana.variants`
	`sequana.vcftools`
	`sequana.viz`
	`sequana.viz.anova`
	`sequana.viz.bar`
	`sequana.viz.boxplot`
	`sequana.viz.clusterisation`
	`sequana.viz.core`
	`sequana.viz.corrplot`
	`sequana.viz.dendogram`
	`sequana.viz.dotplot`
	`sequana.viz.heatmap`
	`sequana.viz.hinton`
	`sequana.viz.hist2d`
	`sequana.viz.ideogram`
	`sequana.viz.imshow`
	`sequana.viz.isomap`
	`sequana.viz.linkage`
	`sequana.viz.mds`
	`sequana.viz.pca`
	`sequana.viz.plotly`
	`sequana.viz.scatter`
	`sequana.viz.tsne`
	`sequana.viz.venn`
	`sequana.viz.vizir`
	`sequana.viz.volcano`
	`sequana.vst`

	w
	`sequana.wigtools`

	z
	`sequana.zdna`