All modules for which code is available
- sequana.G4hunter
- sequana.annotation
- sequana.assembly
- sequana.bamtools
- sequana.bed
- sequana.bedtools
- sequana.biomol
- sequana.blast
- sequana.canu_scanner
- sequana.checkm
- sequana.cigar
- sequana.cnv
- sequana.codon
- sequana.compare
- sequana.contigs
- sequana.coverage
- sequana.cpg_islands
- sequana.criteria
- sequana.cruciforms
- sequana.datatools
- sequana.demultiplex
- sequana.enrichment.gsea
- sequana.enrichment.kegg
- sequana.enrichment.mart
- sequana.enrichment.ontology
- sequana.enrichment.panther
- sequana.enrichment.quickgo
- sequana.fasta
- sequana.fasta_gff_correction
- sequana.fastq
- sequana.fastq_splitter
- sequana.fastqc
- sequana.featurecounts
- sequana.find_motif
- sequana.frip
- sequana.genbank
- sequana.gfa
- sequana.gff3
- sequana.gtf_fixer
- sequana.hmmtools
- sequana.homer
- sequana.idr
- sequana.iem
- sequana.imotif
- sequana.isoseq
- sequana.itol
- sequana.kegg
- sequana.kmer
- sequana.kozak
- sequana.kraken.analysis
- sequana.kraken.consensus
- sequana.kraken.downloads
- sequana.kraken.multikraken
- sequana.kraken.sequential
- sequana.krona
- sequana.laa
- sequana.macs3
- sequana.metrics
- sequana.mgi
- sequana.mh
- sequana.misc
- sequana.mixture
- sequana.modules_report.bamqc
- sequana.modules_report.base_module
- sequana.modules_report.bwa_bam_to_fastq
- sequana.modules_report.coverage
- sequana.modules_report.cutadapt
- sequana.modules_report.fastq_stats
- sequana.modules_report.fastqc
- sequana.modules_report.joint_calling
- sequana.modules_report.kegg_enrichment
- sequana.modules_report.kraken
- sequana.modules_report.multi_summary
- sequana.modules_report.pacbio_input_bam
- sequana.modules_report.panther_enrichment
- sequana.modules_report.phix
- sequana.modules_report.quast
- sequana.modules_report.rnadiff
- sequana.modules_report.summary
- sequana.modules_report.trf
- sequana.modules_report.uniprot_enrichment
- sequana.modules_report.variant_calling
- sequana.mpileup
- sequana.orthofinder
- sequana.pacbio
- sequana.pacbio_amplicon
- sequana.palindromes
- sequana.phantom
- sequana.phred
- sequana.plots.canvasjs_base
- sequana.plots.canvasjs_linegraph
- sequana.protein
- sequana.restriction
- sequana.ribodesigner
- sequana.rnadiff
- sequana.rnafold
- sequana.running_median
- sequana.salmon
- sequana.sequence
- sequana.sniffer
- sequana.snpeff
- sequana.somy
- sequana.stats
- sequana.summary
- sequana.taxonomy
- sequana.telomere
- sequana.tools
- sequana.trf
- sequana.utils.checker
- sequana.utils.datatables_js
- sequana.utils.df2html
- sequana.utils.fisher
- sequana.utils.pandas
- sequana.utils.singleton
- sequana.utils.tree
- sequana.variants
- sequana.vcftools
- sequana.viz.anova
- sequana.viz.bar
- sequana.viz.boxplot
- sequana.viz.clusterisation
- sequana.viz.core
- sequana.viz.corrplot
- sequana.viz.dendogram
- sequana.viz.dotplot
- sequana.viz.heatmap
- sequana.viz.hinton
- sequana.viz.hist2d
- sequana.viz.ideogram
- sequana.viz.imshow
- sequana.viz.isomap
- sequana.viz.linkage
- sequana.viz.pca
- sequana.viz.plotly
- sequana.viz.scatter
- sequana.viz.tsne
- sequana.viz.venn
- sequana.viz.vizir
- sequana.viz.volcano
- sequana.vst
- sequana.wigtools
- sequana.zdna