Source code for sequana.modules_report.quast

# coding: utf-8
#
#  This file is part of Sequana software
#
#  Copyright (c) 2016 - Sequana Development Team
#
#  File author(s):
#      Dimitri Desvillechabrol <dimitri.desvillechabrol@pasteur.fr>,
#          <d.desvillechabrol@gmail.com>
#
#  Distributed under the terms of the 3-clause BSD license.
#  The full license is in the LICENSE file, distributed with this software.
#
#  website: https://github.com/sequana/sequana
#  documentation: http://sequana.readthedocs.io
#
##############################################################################
"""Module to copy quast directory in the report directory"""
import os
import shutil

from sequana.utils import config




def QuastModule(data):
    """Copy quast directory in report directory."""
    quast = data
    dst = os.path.join(config.output_dir, "quast")
    if os.path.isdir(dst):
        shutil.rmtree(dst)
    elif os.path.isfile(dst):
        os.remove(dst)
    shutil.copytree(quast["directory"], dst)