5.2. Quality histogram a la fastQCΒΆ

Get a data set example

from sequana import sequana_data
dataset  = sequana_data("test.fastq", "testing")

Create a FastQC instance

from sequana import FastQC
qc = FastQC(dataset, verbose=False)

plot the histogram

qc.boxplot_quality()
../_images/sphx_glr_plot_fastqc_hist_001.png

Total running time of the script: (0 minutes 0.117 seconds)

Download Python source code: plot_fastqc_hist.py
Download IPython notebook: plot_fastqc_hist.ipynb